PepcDB | Data Available for Download

Last updated: February 22, 2012

PepcDB Data Files

• README -- documentation of files available on this page
• pepcTargets.xml.gz -- all targets in PepcDB
• pepcTargets.fasta.gz -- all target sequences in PepcDB
• pepcTargetsDNA.fasta.gz -- target DNA sequences in PepcDB
• pepcTrialSequences.fasta.gz -- sequences of experimental trials in PepcDB
• trial_experimental_history.txt -- experimental trial status history with dates when target protein was selected, cloned, expressed, purified, etc.
• protein_expression_trials.txt -- list of expression trials in PepcDB and information about their expression systems

Depositing Center PepcDB XML Files

Current Contributors

• ATCG3D.xml.gz
• CESG.xml.gz
• CHTSB.xml.gz
• CSGID.xml.gz
• EFI.xml.gz
• ISFI.xml.gz
• JCSG.xml.gz
• MCSG.xml.gz
• MPP.xml.gz
• NESG.xml.gz
• NYCOMPS.xml.gz
• NYSGRC.xml.gz
• NYSGXRC.xml.gz
• SSGCID.xml.gz
• TEMIMPS.xml.gz
• TMPC.xml.gz

Former Contributors

• BIGS.xml.gz
• BSGC.xml.gz
• BSGI.xml.gz
• CSMP.xml.gz
• ISPC.xml.gz
• MSGP.xml.gz
• OPPF.xml.gz
• RSGI.xml.gz
• S2F.xml.gz
• SECSG.xml.gz
• SGC.xml.gz
• SGPP.xml.gz
• SGX.xml.gz
• SPINE.xml.gz
• TB.xml.gz
• XMTB.xml.gz
• YSG.xml.gz

PepcDB XML Schema Files

• pepcDB-v9.3.3.xsd -- current PepcDB schema
• pepcDB-v9.3.3-external.xsd -- adjusted schema to support TargetDB data